Maximum likelihood phylogenetic trees based on individual SSU, ITS and LSU rDNA sequence variants (335 in count) available for Glomeromycota species present in India. Both progressive (with Clustal W) and localized multiple sequence alignment (with MAFFT) was done at EMBL-EBI server (http://www.ebi.ac.uk/). All maximum likelihood phylogenetic analyses were computed through the CIPRES web-portal with RAxML ver. 7.2.8 (Stamatakis et al., 2008) using 1000 bootstraps and the GTRGAMMA model for both bootstrapping and tree inference. Trees were also built with Phyml and DNAml software (available at http://mobyle.pasteur.fr/cgi-bin). Branches receiving < 60% bootstrap support were collapsed to polytomies. ITOL (http://itol.embl.de/) was used for drawing final trees. Sequences marked with * indicates our sequences.
Diversispora_epigaea_gi|342298397|emb|FR686941.1|Acaulospora_scrobiculata_gi|345134114|emb|FR692352.1|Funneliformis_caledonium_gi|15809594|gb|AY035642.1|Funneliformis_caledonium_gi|358441599|gb|JQ048775.1|Gigaspora_rosea_gi|3493490|gb|AF004701.1|Glomus_aggregatum_gi|254212324|gb|GQ205062.1|Claroideoglomus_etunicatum_gi|482680595|gb|KC841645.1|Gigaspora_rosea_gi|295418710|emb|FN547584.1|Acaulospora_laevis_gi|229359227|emb|FM876781.1|Paraglomus_laccatum_gi|154147374|emb|AM295494.1|Claroideoglomus_etunicatum_gi|482680590|gb|KC841640.1|Racocetra_fulgida_gi|365176731|emb|FR750145.1|Gigaspora_rosea_gi|295418712|emb|FN547586.1|Gigaspora_margarita_gi|5918904|gb|AF162460.1|Dentiscutata_heterogama_gi|361049999|emb|FR750016.1|Claroideoglomus_etunicatum_gi|482680603|gb|KC841653.1|Dentiscutata_heterogama_gi|361049997|emb|FR750014.1|Gigaspora_margarita_gi|5918906|gb|AF162462.1|Gigaspora_margarita_gi|5918905|gb|AF162461.1|Gigaspora_margarita_gi|5918911|gb|AF162467.1|Funneliformis_caledonium_gi|358441595|gb|JQ048771.1|Acaulospora_scrobiculata_gi|345134113|emb|FR692351.1|Diversispora_epigaea_gi|342298395|emb|FR686939.1|Ambispora_leptoticha_gi|10119822|dbj|AB048638.1|Redeckera_fulvum_gi|126468640|emb|AM418547.1|Acaulospora_laevis_gi|229359230|emb|FM876784.1|Glomus_heterosporum_gi|33772389|gb|AY285871.1|Funneliformis_caledonium_gi|264670141|gb|FJ769289.1|Gigaspora_margarita_gi|5918907|gb|AF162463.1|Claroideoglomus_claroideum_gi|377656717|gb|JN847440.1|Funneliformis_caledonium_gi|358441596|gb|JQ048772.1|Claroideoglomus_claroideum_gi|361050050|emb|FR750074.1|Funneliformis_caledonium_gi|15809599|gb|AY035647.1|Dentiscutata_heterogama_gi|365176752|emb|FR750166.1|Claroideoglomus_claroideum_gi|257423601|gb|GQ388711.1|Funneliformis_caledonium_gi|310771027|emb|FN547498.2|Glomus_diaphanum_gi|109390710|emb|AJ972462.1|Acaulospora_koskei_gi|796536300|gb|KP191473.1|Paraglomus_laccatum_gi|361050054|emb|FR750083.1|Racocetra_fulgida|365176728|emb|FR750142.1|Ambispora_leptoticha_gi|10119840|dbj|AB048656.1|Dentiscutata_heterogama_gi|365176744|emb|FR750158.1|Claroideoglomus_claroideum_gi|257423599|gb|GQ388709.1|Gigaspora_rosea_gi|295418707|emb|FN547581.1|Scutellospora_cerradensis_gi|10119893|dbj|AB048686.1|Racocetra_persica_gi|339740134|gb|JN194177.1|Acaulospora_alpina_gi|325120916|emb|FR681926.1|Gigaspora_rosea_gi|365176763|emb|FR750177.1|Ambispora_leptoticha_gi|10119880|dbj|AB048673.1|Scutellospora_cerradensis_gi|10119897|dbj|AB048690.1|Racocetra_fulgida_gi|365176722|emb|FR750136.1|Gigaspora_rosea_gi|365176766|emb|FR750180.1|Gigaspora_rosea_gi|365176770|emb|FR750184.1|Acaulospora_scrobiculata_gi|345134115|emb|FR692353.1|Gigaspora_rosea_gi|295418721|emb|FN547595.1|Glomus_aggregatum_gi|254212325|gb|GQ205063.1|Gigaspora_margarita_gi|5918915|gb|AF162471.1|Ambispora_leptoticha_gi|10119825|dbj|AB048641.1|Ambispora_leptoticha_gi|48975915|emb|AJ567807.1|Racocetra_fulgida_gi|365176726|emb|FR750140.1|Claroideoglomus_claroideum_gi|257423600|gb|GQ388710.1|Claroideoglomus_claroideum_gi|154756911|gb|EF989119.1|Archaeospora_schenckii_gi|361050003|emb|FR750020.1|Diversispora_epigaea_gi|342298394|emb|FR686938.1|Gigaspora_rosea_gi|295418711|emb|FN547585.1|Redeckera_fulvum_gigi|126468639|emb|AM418546.1|Claroideoglomus_claroideum_gi|361050038|emb|FR750055.1|Glomus_diaphanum_gi|109390711|emb|AJ972463.1|Gigaspora_rosea_gi|295418703|emb|FN547577.1|Gigaspora_albida_gi|3493496|gb|AF004707.1|Ambispora_leptoticha_gi|10119878|dbj|AB048671.1|Acaulospora_delicata_gi|344165647|gb|JF439203.1|Dentiscutata_heterogama_gi|361049996|emb|FR750013.1|Gigaspora_rosea_gi|295418705|emb|FN547579.1|Ambispora_leptoticha_gi|10119886|dbj|AB048679.1|Gigaspora_margarita_gi|5918914|gb|AF162470.1|Gigaspora_albida_gi|3493492|gb|AF004703.1|Funneliformis_caledonium_gi|257423613|gb|GQ388723.1|Funneliformis_caledonium_gi|358441654|gb|JQ048830.1|Gigaspora_rosea_gi|365176768|emb|FR750182.1|Glomus_invermaium_gi|656179945|emb|HG969390.1|Acaulospora_laevis_gi|295418638|emb|FN547512.1|Funneliformis_caledonium_gi|358441597|gb|JQ048773.1|Archaeospora_trappei_gi|361050018|emb|FR750035.1|Gigaspora_rosea_gi|295418700|emb|FN547574.1|Acaulospora_koskei_gi|796536306|gb|KP191476.1|Gigaspora_rosea_gi|295418699|emb|FN547573.1|Funneliformis_caledonium_gi|358441655|gb|JQ048831.1|Gigaspora_rosea_gi|16945186|emb|AJ410749.1|Gigaspora_rosea_gi|3493487|gb|AF004698.1|Ambispora_leptoticha_gi|10119883|dbj|AB048676.1|Claroideoglomus_claroideum_gi|257423603|gb|GQ388713.1|Acaulospora_alpina_gi|325120920|emb|FR681930.1|Acaulospora_laevis_gi|295418636|emb|FN547510.1|Gigaspora_rosea_gi|295418698|emb|FN547572.1|Funneliformis_caledonium_gi|358441594|gb|JQ048770.1|Gigaspora_rosea_gi|3493485|gb|AF004696.1|1.Scutellospora_calospora_gi|344165584|gb|JF439140.1|Gigaspora_albida_gi|3493495|gb|AF004706.1|Gigaspora_rosea_gi|16945184|emb|AJ410747.1|Glomus_diaphanum_gi|109390707|emb|AJ972459.1|Scutellospora_cerradensis_gi|10119896|dbj|AB048689.1|Racocetra_weresubiae_gi|365176721|emb|FR750135.1|Gigaspora_rosea_gi|295418709|emb|FN547583.1|Gigaspora_rosea_gi|295418723|emb|FN547597.1|Acaulospora_koskei_gi|796536302|gb|KP191474.1|Acaulospora_alpina_gi|325120917|emb|FR681927.1|Glomus_invermaium_gi|656179881|emb|HG969374.1|Acaulospora_spinosa_gi|365176737|emb|FR750151.1|Gigaspora_margarita_gi|5918897|gb|AF162453.1|Ambispora_leptoticha_gi|10119829|dbj|AB048645.1|Dentiscutata_heterogama_gi|361049995|emb|FR750012.1|Gigaspora_rosea_gi|295418715|emb|FN547589.1|Racocetra_fulgida_gi|361050061|emb|FR750134.1|Glomus_macrocarpum_gi|365176800|emb|FR750371.1|Funneliformis_caledonium_gi|254212351|gb|GQ205089.1|Acaulospora_scrobiculata_gi|345134112|emb|FR692350.1|Funneliformis_caledonium_gi|294337363|emb|FN423698.1|Gigaspora_rosea_gi|33386520|emb|AJ504639.1|Claroideoglomus_claroideum_gi|361050041|emb|FR750058.1|Scutellospora_cerradensis_gi|10119892|dbj|AB048685.1|Ambispora_leptoticha_gi|10119831|dbj|AB048647.1|Acaulospora_laevis_gi|295418642|emb|FN547516.1|Funneliformis_mosseae_gi|34165556|gb|JF439112.1|Claroideoglomus_etunicatum_gi|32329903|gb|AY236323.1|Dentiscutata_heterogama_gi|365176750|emb|FR750164.1|Acaulospora_laevis_gi|229359233|emb|FM876787.1|Septoglomus_constrictum_gi|344165620|gb|JF439176.1|Ambispora_leptoticha_gi|10119879|dbj|AB048672.1|Glomus_invermaium_gi|656179899|emb|HG969379.1|Gigaspora_rosea_gi|295418722|emb|FN547596.1|Funneliformis_caledonium_gi|15809603|gb|AY035651.1|Ambispora_gerdemannii_gi|344165654|gb|JF439210.1|Glomus_clarum_gi|254212343|gb|GQ205081.1|Ambispora_leptoticha_gi|4468068|emb|AJ012201.1|Gigaspora_margarita_gi|5918901|gb|AF162457.1|Claroideoglomus_etunicatum_gi|32329909|gb|AY236329.1|Gigaspora_margarita_gi|5918912|gb|AF162468.1|Archaeospora_trappei_gi|361050021|emb|FR750038.1|Ambispora_leptoticha_gi|10119875|dbj|AB048668.1|Dentiscutata_heterogama_gi|365176751|emb|FR750165.1|Racocetra_persica_gi|16945531|emb|AJ410740.1|Diversispora_epigaea_gi|342298396|emb|FR686940.1|Gigaspora_rosea_gi|16945181|emb|AJ410744.1|Acaulospora_laevis_gi|229359231|emb|FM876785.1|Racocetra_weresubiae_gi|361050061|emb|FR750134.1|Gigaspora_rosea_gi|295418718|emb|FN547592.1|Funneliformis_caledonium_gi|15809598|gb|AY035646.1|Acaulospora_laevis_gi|229359228|emb|FM876782.1|Acaulospora_laevis_gi|295418634|emb|FN547508.1|Septoglomus_constrictum_gi|344165611|gb|JF439167.1|Gigaspora_margarita_gi|5918908|gb|AF162464.1|Ambispora_leptoticha_gi|10119815|dbj|AB048631.1|Funneliformis_mosseae_gi|89147849|gb|DQ400129.1|Claroideoglomus_etunicatum_gi|32329905|gb|AY236325.1|Claroideoglomus_claroideum_gi|257423598|gb|GQ388708.1|Gigaspora_albida_gi|3493493|gb|AF004704.1|Glomus_diaphanum_gi|109390705|emb|AJ972457.1|Gigaspora_albida_gi|6093127|emb|AJ239118.1|Dentiscutata_heterogama_gi|361050001|emb|FR750018.1|Funneliformis_caledonium_gi|294337364|emb|FN423699.1|Claroideoglomus_etunicatum_gi|482680594|gb|KC841644.1|Gigaspora_margarita_gi|5918909|gb|AF162465.1|Claroideoglomus_etunicatum_gi|482680598|gb|KC841648.1|Gigaspora_rosea_gi|3493488|gb|AF004699.1|Funneliformis_caledonium_gi|358441602|gb|JQ048778.1|Funneliformis_mosseae_gi|361050015|emb|FR750032.1|Dentiscutata_heterogama_gi|361050002|emb|FR750019.1|Acaulospora_morrowiae_gi|6686775|emb|AJ242500.1|Glomus_clarum_gi|294337361|emb|FN423696.1|Glomus_macrocarpum_gi|365176793|emb|FR750364.1|Racocetra_fulgida_gi|365176725|emb|FR750139.1|Funneliformis_caledonium_gi|358441601|gb|JQ048777.1|Gigaspora_albida_gi|3493491|gb|AF004702.1|Gigaspora_rosea_gi|365176762|emb|FR750176.1|Acaulospora_delicata_gi|344165537|gb|JF439093.1|Claroideoglomus_etunicatum_gi|32329908|gb|AY236328.1|Gigaspora_rosea_gi|16945182|emb|AJ410745.1|Racocetra_fulgida_gi|365176727|emb|FR750141.1|Claroideoglomus_claroideum_gi|361050043|emb|FR750060.1|Acaulospora_scrobiculata_gi|345134111|emb|FR692349.1|Gigaspora_margarita_gi|5918902|gb|AF162458.1|Gigaspora_margarita_gi|5918913|gb|AF162469.1|Archaeospora_schenckii_gi|361050004|emb|FR750021.1|Gigaspora_rosea_gi|295418706|emb|FN547580.1|Ambispora_leptoticha_gi|10119828|dbj|AB048644.1|Acaulospora_alpina_gi|325120918|emb|FR681928.1|Redeckera_fulvum_gigi|126468638|emb|AM418545.1|Paraglomus_laccatum_gi|339740121|gb|JN194164.1|Funneliformis_mosseae_gi|695202876|gb|KF836946.1|Acaulospora_mellea_gi|344165534|gb|JF439090.1|Claroideoglomus_claroideum_gi|684156082|gb|KF914402.1|Ambispora_leptoticha_gi|10119889|dbj|AB048682.1|Gigaspora_rosea_gi|295418713|emb|FN547587.1|Dentiscutata_heterogama_gi|365176747|emb|FR750161.1|Gigaspora_rosea_gi|295418697|emb|FN547571.1|Claroideoglomus_etunicatum_gi|32329904|gb|AY236324.1|Claroideoglomus_claroideum_gi|257423602|gb|GQ388712.1|Archaeospora_schenckii_gi|361050005|emb|FR750022.1|Corymbiglomus_tortuosum_gi|344165539|gb|JF439095.1|Claroideoglomus_etunicatum_gi|482680596|gb|KC841646.1|Dentiscutata_heterogama_gi|361050000|emb|FR750017.1|Funneliformis_caledonium_gi|295418621|emb|FN547495.1|Scutellospora_cerradensis_gi|10119895|dbj|AB048688.1|Funneliformis_caledonium_gi|254212352|gb|GQ205090.1|Racocetra_fulgida_gi|365176721|emb|FR750135.1|Ambispora_leptoticha_gi|10119826|dbj|AB048642.1|Claroideoglomus_etunicatum_gi|32329907|gb|AY236327.1|Ambispora_leptoticha_gi|10119817|dbj|AB048633.1|Pacispora_scintillans_gi|229359277|emb|FM876831.1|Acaulospora_mellea_gi|344165533|gb|JF439089.1|Glomus_invermaium_gi|656179902|emb|HG969380.1|Gigaspora_rosea_gi|3493486|gb|AF004697.1|Funneliformis_caledonium_gi|254212353|gb|GQ205091.1|Acaulospora_laevis_gi|295418633|emb|FN547507.1|Glomus_invermaium_gi|656179908|emb|HG969381.1|Acaulospora_laevis_gi|295418637|emb|FN547511.1|Acaulospora_laevis_gi|229359229|emb|FM876783.1|Glomus_macrocarpum_gi|365176815|emb|FR750537.1|Ambispora_leptoticha_gi|10119824|dbj|AB048640.1|Archaeospora_trappei_gi|6093120|emb|AJ243420.1|Gigaspora_decipiens_gi|6093128|emb|AJ239119.1|Archaeospora_trappei_gi|361050019|emb|FR750036.1|Glomus_diaphanum_gi|109390706|emb|AJ972458.1|Funneliformis_caledonium_gi|295418620|emb|FN547494.1|Ambispora_leptoticha_gi|10119887|dbj|AB048680.1|Dentiscutata_heterogama_gi|365176749|emb|FR750163.1|Claroideoglomus_etunicatum_gi|32329910|gb|AY236330.1|Racocetra_persica_gi|16945530|emb|AJ410739.1|Acaulospora_laevis_gi|229359226|emb|FM876780.1|Ambispora_leptoticha_gi|10119884|dbj|AB048677.1|Gigaspora_margarita_gi|5918899|gb|AF162455.1|Claroideoglomus_etunicatum_gi|482680602|gb|KC841652.1|Ambispora_leptoticha_gi|10119842|dbj|AB048658.1|Gigaspora_albida_gi|3493494|gb|AF004705.1|Dentiscutata_heterogama_gi|365176745|emb|FR750159.1|Acaulospora_spinosa-gi|365176741|emb|FR750155.1|Glomus_hoi_gi|164600707|gb|EU345429.1|Acaulospora_spinosa_gi|365176742|emb|FR750156.1|Racocetra_fulgida_gi|365176730|emb|FR750144.1|Glomus_dimorphicum_gi|675879476|gb|KJ934791.1|Acaulospora_spinosa-gi|365176739|emb|FR750153.1|Gigaspora_rosea_gi|3493489|gb|AF004700.1|Archaeospora_schenckii_gi|361050006|emb|FR750023.1|Gigaspora_rosea_gi|295418716|emb|FN547590.1|Acaulospora_mellea_gi|344165535|gb|JF439091.1|Gigaspora_rosea_gi|365176765|emb|FR750179.1|Ambispora_leptoticha_gi|10119820|dbj|AB048636.1|Funneliformis_caledonium_gi|295418625|emb|FN547499.1|Corymbiglomus_tortuosum_gi|344165538|gb|JF439094.1|Racocetra_fulgida_gi|365176723|emb|FR750137.1|Acaulospora_spinosa_gi|365176740|emb|FR750154.1|Glomus_invermaium_gi|656179927|emb|HG969386.1|Archaeospora_trappei_gi|361050017|emb|FR750034.1|Ambispora_leptoticha_gi|10119888|dbj|AB048681.1|Ambispora_leptoticha_gi|10119823|dbj|AB048639.1|Dentiscutata_heterogama_gi|229359285|emb|FM876839.1|Glomus_diaphanum_gi|254212331|gb|GQ205069.1|Gigaspora_rosea_gi|365176764|emb|FR750178.1|Funneliformis_mosseae_gi|257423605|gb|GQ388715.1|Acaulospora_alpina_gi|325120919|emb|FR681929.1|Gigaspora_margarita_gi|5918903|gb|AF162459.1|Claroideoglomus_etunicatum_gi|482680601|gb|KC841651.1|Dentiscutata_heterogama_gi|365176746|emb|FR750160.1|Glomus_mosseae_gi|54114678|emb|AJ849469.1|Claroideoglomus_etunicatum_gi|482680600|gb|KC841650.1|Acaulospora_koskei_gi|796536304|gb|KP191475.1|Gigaspora_rosea_gi|365176771|emb|FR750185.1|Redeckera_fulvum_gigi|126468641|emb|AM418548.1|Acaulospora_laevis_gi|689555982|gb|KM078598.1|Gigaspora_rosea_gi|295418704|emb|FN547578.1|Glomus_microaggregatum_gi|703264981|emb|HG425991.1|Pacispora_scintillans_gi|229359278|emb|FM876832.1|Ambispora_leptoticha_gi|10119881|dbj|AB048674.1|Gigaspora_margarita_gi|5918910|gb|AF162466.1|Ambispora_leptoticha_gi|10119814|dbj|AB048630.1|Ambispora_leptoticha_gi|10119851|dbj|AB048667.1|Funneliformis_caledonium_gi|358441600|gb|JQ048776.1|Ambispora_leptoticha_gi|10119885|dbj|AB048678.1|Dentiscutata_heterogama_gi|229359283|emb|FM876837.1|Racocetra_fulgida_gi|365176729|emb|FR750143.1|Archaeospora_trappei_gi|361050020|emb|FR750037.1|Gigaspora_rosea_gi|295418701|emb|FN547575.1|Gigaspora_rosea_gi|295418702|emb|FN547576.1|Gigaspora_rosea_gi|684156084|gb|KF914404.1|Claroideoglomus_etunicatum_gi|482680589|gb|KC841639.1|Glomus_heterosporum_gi|33772388|gb|AY285870.1|Acaulospora_spinosa_gi|365176738|emb|FR750152.1|Claroideoglomus_etunicatum_gi|482680593|gb|KC841643.1|Ambispora_leptoticha_gi|10119819|dbj|AB048635.1|Archaeospora_trappei_gi|6093119|emb|AJ243419.1|Funneliformis_caledonium_gi|254212350|gb|GQ205088.1|Acaulospora_scrobiculata_gi|345134116|emb|FR692354.1|Ambispora_leptoticha_gi|10119838|dbj|AB048654.1|Racocetra_fulgida_gi|365176724|emb|FR750138.1|Acaulospora_morrowiae_gi|210971824|emb|AM905249.1|Ambispora_leptoticha_gi|10119882|dbj|AB048675.1|Claroideoglomus_etunicatum_gi|482680605|gb|KC841655.1|Glomus_macrocarpum_gi|365176795|emb|FR750366.1|Glomus_invermaium_gi|656179912|emb|HG969382.1|Gigaspora_rosea_gi|295418720|emb|FN547594.1|Funneliformis_caledonium_gi|295418623|emb|FN547497.1|Corymbiglomus_tortuosum_gi|344165540|gb|JF439096.1|Septoglomus_constrictum_gi|344165624|gb|JF439180.1|Dentiscutata_heterogama_gi|365176753|emb|FR750167.1|Glomus_invermaium_gi|656179918|emb|HG969384.1|Claroideoglomus_etunicatum_gi|482680591|gb|KC841641.1|Gigaspora_rosea_gi|365176767|emb|FR750181.1|Gigaspora_rosea_gi|295418717|emb|FN547591.1|Acaulospora_laevis_gi|310771028|emb|FN547509.2|Funneliformis_caledonium_gi|358441663|gb|JQ048839.1|Claroideoglomus_claroideum_gi|257423604|gb|GQ388714.1|Gigaspora_rosea_gi|295418714|emb|FN547588.1|Scutellospora_cerradensis_gi|10119890|dbj|AB048683.1|Dentiscutata_heterogama_gi|229359284|emb|FM876838.1|Gigaspora_rosea_gi|16945180|emb|AJ410743.1|Funneliformis_caledonium_gi|358441598|gb|JQ048774.1|Glomus_invermaium_gi|656179954|emb|HG969392.1|Ambispora_leptoticha_gi|10119832|dbj|AB048648.1|